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Thanks for the visit. And I m undecided on Indiana Jones, can he really be like the first?
To be published in Taking the Red Pill: Science, Philosophy and Religion in The Matrix (Ben Bella Books, April 2003). Published on KurzweilAI.net March 3, 2003.
As the essays throughout this book demonstrate, the Wachowski Brothers designed The Matrix to work at many levels. They carefully thought through the film's philosophical underpinnings, religious symbolism, and scientific speculations. But there are a few riddles in The Matrix, aspects of the film that seem nonsensical or defy the laws of science. These apparent glitches include:
• The Bioport—how can a socket in your head control your senses? How can it be inserted without killing you?
• The Red Pill—since the pill is virtual, how can it throw Neo out of the Matrix?
• The Power Plant—can people really be an energy source?
• Entering and Exiting the Matrix—why do the rebels need telephones to come and go?
• The Bugbot—what's the purpose of the bugbot?
• Perceptions in the Matrix—how do the machines know what fried chicken tastes like?
• Neo's Mastery of the Avatar—how can Neo fly?
• Consciousness and the Matrix—are the machines in the Matrix alive and conscious? Or are they only machines, intelligent but mindless?
This essay addresses these questions and shows how these seeming glitches can be resolved.

Can the machines really create a virtual world through a bioport? And how does it work? The bioport is a way of giving the Matrix computers full access to the information channels of the brain. It is located at the back of the neck—probably between the occipital bone at the base of the skull, and the first neck vertebra. Wiring would best enter through the soft cartilage that cushions the skull on the spinal column, and pass up through the natural opening that lets the spinal cord into the skull. This avoids drilling through bone, and maintains the mechanical and biological integrity of the skull's protection. A baby fitted with a bioport can easily survive the operation.

The bioport terminates in a forest of electrodes spanning the volume of the brain. In a newborn, the sheathed mass of wire filaments is pushed into the head through the bioport. On reaching the skull cavity, the sheath would be released, and the filaments spread out like a dandelion, gently permeating the developing cortex. Nested sheaths would release a branching structure of filamentary electrodes. As each sheathed wire approaches the surface of the brain, it releases thousands of smaller electrodes. In the neonate, brain cells have few synaptic connections, so the slender electrodes can penetrate harmlessly.
for more go to this link http://www.kurzweilai.net/articles/art0553.html?printable=1